CFM-ID: a web server for annotation, spectrum prediction and metabolite identification from tandem mass spectra. Nucleic Acids Res. 42 (Web Server issue):W94-9. This project is supported by …

Jul 31, 2019 · Download CFM-ID for free. Competitive Fragmentation Modeling for Metabolite Identification. Windows binaries and cross-platform source code for processing of EI-MS (GC-MS) …

Given an input spectrum and a list of candidate smiles (or inchi) strings, cfm-id computes the predicted spectrum for each candidate and compares it to the input spectrum.

May 24, 2022 · The CFM-ID 4.0 web server makes use of a substantially improved MS fragmentation algorithm, a much larger database of experimental and in silico predicted MS/MS spectra and …

To facilitate the generation of predicted spectral reference libraries we developed CFM-ID, a computer program that can accurately predict ESI-MS/MS spectrum for a given compound structure.

Maximum compound size is 200 atoms. If you wish to run multiple jobs, input larger query molecules, or customize the computation parameters, you can freely download the docker image.

Download this app named CFM-ID. Windows binaries and cross-platform source code for processing of EI-MS (GC-MS) and ESI-MS/MS (LC-MS) data for identification of metabolites.

For Visual Studio, cfm.sln will be generated. Open this file in Visual Studio and build the INSTALL project. Any other generator, you're on your own! This should produce the executable files in the …

Windows executables and cross-platform source code for the combinatorial fragmentation tool are freely available at http://sourceforge.net/projects/cfm-id. Supplementary files containing test molecule lists …

Feb 14, 2022 · CFM-ID provides a method for accurately and efficiently identifying metabolites in spectra generated by electrospray tandem mass spectrometry (ESI-MS/MS).

May 24, 2022 · The CFM-ID 4.0 web server (https://cfmid.wishartlab.com) is an online tool for predicting, annotating and interpreting tandem mass (MS/MS) spectra of small molecules. It is specifically …

config_file: (optional) The filename where the configuration parameters of the cfm model can be found (if not given, assumes param_config.txt in current directory). This needs to match the file passed to cfm …

The candidates should be represented as a list of compounds in the format 'ID SMILES_or_InChI' on each line. The list can have a maximum of 100 compounds. Maximum individual compound size is …

Each fragment can be linked back to predicted spectra by its fragement id.

Determines the compounds that most closely match to a given spectra. The spectra for each candidate compound (in the provided list) are predicted using a pre-trained model and compared to the input …

First published version of CFM-ID, using machine learned model to predict EI-MS (or ESI-MS/MS) spectrum from given compound. Also used to predict the compound from a given spectrum.

CFM-ID: a web server for annotation, spectrum prediction and metabolite identification from tandem mass spectra. Nucleic Acids Res. 42 (Web Server issue):W94-9.

* There are duplicated compounds between different data sources.

Predicts the spectra for a given input molecule. Spectra are computed for low (10V), medium (20V) and high (40V) collision energy levels and are represented by a list of 'mass intensity' pairs, each …

Experience hassle-free viewing of ColdFusion Markup File (.cfm) files with our online CFM file viewer. You don't need to register for an account or install any software - just open your files in any modern …